Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0795438.3a.1a with 2 members (ubiquitin carboxyl-terminal hydrolase mindy)

Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata /

... /

Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Euarchontoglires / Primates /

Strepsirrhini /

Completeness score: 0.67

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This HOG has 60 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0795438	280	265	ubiquitin carboxyl-terminal hydrolase mindy
2	HOG:E0795438.3a.1a	201	103	ubiquitin carboxyl-terminal hydrolase mindy
3	HOG:E0319330	29	116	ubiquitinyl hydrolase
4	HOG:E0319330.7b	9	15	ubiquitinyl hydrolase
5	HOG:E0319330.11b	7	11	ubiquitinyl hydrolase
6	HOG:E0795438.3a	6	109	ubiquitin carboxyl-terminal hydrolase mindy
7	HOG:E0145962	6	11	Deubiquitinating enzyme MINDY-3/4 conserved domain-containing protein
8	HOG:E0795438.6b	4	2	ubiquitin carboxyl-terminal hydrolase mindy
9	HOG:E0795438.6a	4	2	ubiquitin carboxyl-terminal hydrolase mindy
10	HOG:E0319330.14b	4	8	ubiquitinyl hydrolase
11	HOG:E0795438.5b	2	1	ubiquitin carboxyl-terminal hydrolase mindy
12	HOG:E0795438.5a	2	1	ubiquitin carboxyl-terminal hydrolase mindy
13	HOG:E0795438.4b	2	1	ubiquitin carboxyl-terminal hydrolase mindy
14	HOG:E0795438.4a	2	1	ubiquitin carboxyl-terminal hydrolase mindy
15	HOG:E0795438.3a.2b	2	1	ubiquitin carboxyl-terminal hydrolase mindy
16	HOG:E0795438.3a.2a	2	1	ubiquitin carboxyl-terminal hydrolase mindy
17	HOG:E0795438.2b	2	1	ubiquitin carboxyl-terminal hydrolase mindy
18	HOG:E0795438.2a	2	1	ubiquitin carboxyl-terminal hydrolase mindy
19	HOG:E0795438.1b	2	1	ubiquitin carboxyl-terminal hydrolase mindy
20	HOG:E0795438.1a	2	1	ubiquitin carboxyl-terminal hydrolase mindy
21	HOG:E0319330.9a	2	8	ubiquitinyl hydrolase
22	HOG:E0319330.8a	2	1	ubiquitinyl hydrolase
23	HOG:E0319330.7b.1c	2	2	ubiquitinyl hydrolase
24	HOG:E0319330.7a	2	2	ubiquitinyl hydrolase
25	HOG:E0319330.14a	2	2	ubiquitinyl hydrolase

Showing 1 to 25 of 60 rows rows per page